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Kumpulan A
| Pasukan | P | M | S | K | J | B | MT | |
| 1 | KL Plus* | 6 | 4 | 1 | 1 | 14 | 5 | 13 |
| 2 | Perlis* | 6 | 4 | 1 | 1 | 13 | 5 | 13 |
| 3 | Pahang | 6 | 1 | 3 | 2 | 14 | 11 | 6 |
| 4 | Melaka | 6 | 0 | 1 | 5 | 4 | 24 | 1 |
Kumpulan B
| Pasukan | P | M | S | K | J | B | MT | |
| 1 | N.Sembilan* | 6 | 6 | 0 | 0 | 15 | 1 | 18 |
| 2 | Terengganu* | 6 | 4 | 0 | 2 | 14 | 5 | 12 |
| 3 | Johor | 6 | 2 | 0 | 4 | 12 | 10 | 6 |
| 4 | Sarawak | 6 | 0 | 0 | 6 | 1 | 26 | 0 |
Kumpulan C
| Pasukan | P | M | S | K | J | B | MT | |
| 1 | Johor FC* | 6 | 4 | 1 | 1 | 14 | 6 | 13 |
| 2 | Perak | 6 | 3 | 2 | 1 | 11 | 4 | 11 |
| 3 | Kuala Lumpur | 6 | 1 | 2 | 3 | 3 | 9 | 5 |
| 4 | MyTeam | 6 | 1 | 1 | 4 | 7 | 16 | 4 |
Kumpulan D
| Pasukan | P | M | S | K | J | B | MT | |
| 1 | Selangor* | 6 | 4 | 1 | 1 | 15 | 8 | 13 |
| 2 | KM Naza* | 6 | 4 | 0 | 2 | 13 | 8 | 12 |
| 3 | PDRM | 6 | 1 | 2 | 3 | 5 | 12 | 5 |
| 4 | Sabah | 6 | 1 | 1 | 4 | 7 | 12 | 4 |
Kumpulan E
| Pasukan | P | M | S | K | J | B | MT | |
| 1 | Kelantan* | 6 | 5 | 0 | 1 | 12 | 4 | 15 |
| 2 | Kedah | 6 | 3 | 1 | 2 | 9 | 3 | 10 |
| 3 | Pulau Pinang | 6 | 2 | 1 | 3 | 7 | 11 | 7 |
| 4 | ATM | 6 | 0 | 2 | 4 | 5 | 15 | 2 |
*Pasukan berhuruf tebal layak ke suku akhir Piala Malaysia 2009
